> For the complete documentation index, see [llms.txt](https://help.bioinsight.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/download_variants.md).

# Downloading variants

Exporting annotated variant data facilitates collaboration and record-keeping. To start the download, click the Export icon at the top of the Analysis Tools tab.

The XLSX export file contains only the variants visible after applying filters. If your filtered list has more than 1,500 variants, the export file will include only the first 1,500.

## Export file includes the following data:

### Core case and variant identifiers

* Case ID
* Chromosome
* Position
* REF
* ALT
* END
* Vartype

### Gene and transcript data

* Gene
* Transcript
* Effect

### Quality metrics

* Quality
* Depth
* Alternate Read
* Proband Zygosity
* Allele Bias

### Population frequency data

* GnomAD AF
* GnomAD AC
* GnomAD Grpmax FAF (95% CI) (pipeline v100.41+) — included for small variants in GRCh38 cases annotated with [**gnomAD 4.1 all**](/emedgene/emedgene-analyze-manual/settings/organization_settings_-330+/workbench-and-pipeline/gnomad-annotation-v100.41+.md).
* GnomAD SV AF
* GnomAD SV AC
* Max AF

### Pathogenicity and interpretation

* Pathogenicity
* Coding Change
* Protein Change
* Hom
* Hemi
* Tag

### Prediction and scoring tools

* Prediction
* SpliceAI DS AG, AL, DG, DL
* SIFT Pred
* LRT Pred
* MutationTaster Pred
* PolyPhen2\_HVAR Pred
* PolyPhen2\_HDIV Pred
* DANN Score
* REVEL Score
* CADD Phred Score
* PrimateAI3D Score
* PrimateAI3D Prediction

### Constraint and gene-level scores

* ExAC pLI
* gnomAD pLI
* Missense z-score
* pRec

### Curate and case annotations

* Known Variants
* Other Family Members
* Reference
* Evidence Text
* Diseases
* Disease Inheritance Mode

### Additional case metrics

* Phenomeld Score
* AI Rank
* Individual Genotype
* Variant length (kbp)
* ISCN
* Cytoband
* Bin Count
* Variant Inheritance


---

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