> For the complete documentation index, see [llms.txt](https://help.bioinsight.illumina.com/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case.md).

# Reviewing a case

- [Individual case page](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/individual_case_page.md)
- [Case status](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/case_status.md)
- [Case statuses in a case lifecycle](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/case_status/out-of-the-box-case-statuses.md)
- [Case progress indicator (v100.40.0+)](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/case_status/case-progress-indicator-v100.40.0+.md)
- [How to update a case status](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/case_status/how-to-update-a-case-status.md)
- [Individual case page header](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/individual-case-page-top-bar.md)
- [Candidates tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/candidates-tab.md)
- [Reviewing the Candidates tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/candidates-tab/reviewing-the-candidates-tab.md)
- [Most Likely Candidates and Candidates](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/candidates-tab/most_likely_candidates_and_candidates.md)
- [Lab tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab.md)
- [Combined quality status](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/combined-quality-status.md)
- [Summary dashboard](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/summary-dashboard.md)
- [Sequencing lab information section](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sequencing-lab-information-section.md)
- [Case quality section](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/case-quality-section.md)
- [Sample quality section](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section.md)
- [NGS sample quality metrics](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/ngs-sample-quality-metrics.md)
- [NGS sample quality](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/ngs-sample-quality-metrics/ngs-sample-quality.md)
- [NGS sex validation](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/ngs-sample-quality-metrics/ngs-sex-validation.md)
- [Ploidy](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/ngs-sample-quality-metrics/ploidy.md)
- [Contamination](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/ngs-sample-quality-metrics/contamination.md)
- [Coverage](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/ngs-sample-quality-metrics/coverage.md)
- [Percentage of mapped reads](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/ngs-sample-quality-metrics/percentage-of-mapped-reads.md)
- [Sequencing error rate](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/ngs-sample-quality-metrics/sequencing-error-rate.md)
- [Array sample quality metrics](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics.md)
- [Array sample quality](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics/array-sample-quality.md)
- [Array sex validation](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics/array-sex-validation.md)
- [Autosomal call rate](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics/autosomal-call-rate.md)
- [Call rate](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics/call-rate.md)
- [Log R deviation](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/array-sample-quality-metrics/log-r-deviation.md)
- [DRAGEN QC report](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/dragen-qc-report.md)
- [Requirements by case type](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/dragen-qc-report/prerequisites-for-accessing-the-dragen-qc-report.md)
- [Prepare QC files for a NGS VCF case](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/dragen-qc-report/prerequisites-for-accessing-the-dragen-qc-report/how-to-i-prepare-metrics-files-generated-by-dragen-to-be-used-as-input-for-emedgene.md)
- [Download DRAGEN QC metrics files](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/sample-quality-section/dragen-qc-report/download-dragen-qc-metrics-files.md)
- [Pedigree section](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/pedigree-section.md)
- [Genes coverage section](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/lab_tab/genes-coverage-section.md)
- [Genome View tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/genome-overview.md)
- [Ideogram mode](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/genome-overview/ideogram-mode.md)
- [Colocation map mode (v100.41+)](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/genome-overview/colocation-map-mode.md)
- [Analysis tools tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+.md)
- [Variant table](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table.md)
- [Variant table columns](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/variant_table_columns.md)
- [Variant table row formatting](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/variant-table-row-formatting.md)
- [Variant table view customization](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/variant-table-view-customization.md)
- [Multi-selection of variants and bulk actions](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/multiselection_of_variants_and_bulk_actions_-340+.md)
- [View / Unview variants](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/multiselection_of_variants_and_bulk_actions_-340+/view-unview-variants.md)
- [Assign / Clear tags](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/multiselection_of_variants_and_bulk_actions_-340+/assign-clear-tags.md)
- [Assign / Clear pathogenicity](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/multiselection_of_variants_and_bulk_actions_-340+/assign-clear-pathogenicity.md)
- [Export selected variants to Curate (v100.40+)](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/multiselection_of_variants_and_bulk_actions_-340+/export-selected-variants-to-curate-v100.40+.md)
- [Adding variants to a case from the Analysis Tools tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/manually_add_variants_to_a_delivered_case.md)
- [Downloading variants](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/variant_table/download_variants.md)
- [Filtering panel](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel.md)
- [Variant search](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/variant_search.md)
- [Filters tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters.md)
- [Quick Filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters.md)
- [Quality filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/quality_filters.md)
- [Polymorphism filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/polymorphism_filters.md)
- [Variant type filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/variant_type_filters.md)
- [Variant effect filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/variant_effect_filters.md)
- [In silico predictions filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/in-silico-predictions-filters.md)
- [Gene filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/gene_filters.md)
- [Phenomatch filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/phenomatch_filters.md)
- [Inheritance filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/inheritance_filters.md)
- [Zygosity filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/zygosity_filters.md)
- [Evidence & Tags filters](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/quick-filters/user_filters.md)
- [Query Builder (v100.40+)](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/query-builder-v100.40+.md)
- [How filtering works in Query Builder](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/query-builder-v100.40+/how-filtering-works-in-query-builder.md)
- [Build a query in Query Builder](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/query-builder-v100.40+/build-a-query-in-query-builder.md)
- [Filter list for Query Builder](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/filters/query-builder-v100.40+/filter-list-for-query-builder.md)
- [Presets tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/presets.md)
- [Creating a preset](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/presets/creating-a-preset.md)
- [Using presets in case review](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/presets/using-presets-in-case-review.md)
- [Creating a custom preset group](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/presets/creating-a-custom-preset-group.md)
- [Custom tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/custom-tab.md)
- [Using presets from a custom preset group in case review](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/filters_presets_panel/custom-tab/using-presets-from-a-custom-preset-group-in-case-review.md)
- [Viewing modes (v100.39+)](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/analysis-tools-tab-beta-v100.39.0+/viewing-modes.md)
- [Versions tab](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/versions_tab.md)
- [Evidence page](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/evidence_page.md)
- [Phenotypic match](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/phenotypic-match.md)
- [Phenotypic match models](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/phenotypic-match/phenotypic-match-models.md)
- [Phenotypic match strength](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/phenotypic-match/phenotypic_match_strength.md)
- [Phenotype weights (v100.40+)](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/phenotypic-match/phenotype-weights-v100.40.0+.md)
- [Editing a delivered case](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/editing_an_existing_case.md)
- [Reflex genetic testing](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/reflex_genetic_testing.md)
- [Variant zygosity notations](https://help.bioinsight.illumina.com/emedgene/emedgene-analyze-manual/reviewing_a_case/variant_zygosity_notations.md)


---

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